API Reference

This section contains a complete reference of the API of the different pyhmmer modules.

• HMMER (pyhmmer.hmmer)
  • Sequence Searches
  • Profile Searches
  • Iterative Searches
  • Utilities
• Easel (pyhmmer.easel)
  • Data Structures
  • Biological Alphabets
  • Sequences
  • Sequence Blocks
  • Alignments
  • Parsers
  • Linear Algebra
  • Miscellaneous
• Plan7 (pyhmmer.plan7)
  • Profile Hidden Markov Models
  • Parsers
  • Pipelines
  • Results
  • Traces
  • Iterative Searches
  • Miscellaneous
• Daemon (pyhmmer.daemon)
  • Client
• Errors (pyhmmer.errors)
  • Memory Errors
  • Value Errors
  • Runtime Errors