User Guide
==========

This section contains guides and documents about some aspects of PyHMMER, 
including the rationale behind the parallelization strategy implemented 
in `pyhmmer.hmmer`.

.. toctree::
   :maxdepth: 1
   :caption: Getting Started

    Installation <install>
    Publications <publications>
    Performance <performance>
    Windows Support <windows>
    Bitscore, P-values & E-values <significance>


.. toctree::
   :maxdepth: 1
   :caption: Resources

   Contribution Guide <contributing>
   Changelog <changes>
   Benchmarks <benchmarks>
   Copyright Notice <copyright>