pyHMMER |Stars|
===============
.. |Stars| image:: https://img.shields.io/github/stars/althonos/pyhmmer.svg?style=social&maxAge=3600&label=Star
:target: https://github.com/althonos/pyhmmer/stargazers
*Cython bindings and Python interface to* `HMMER3 `_.
|TravisCI| |Coverage| |PyPI| |Wheel| |Versions| |Implementations| |License| |Source| |Mirror| |Issues| |Docs| |Changelog| |Downloads| |DOI|
.. |TravisCI| image:: https://img.shields.io/travis/com/althonos/pyhmmer/master.svg?&maxAge=600&style=flat-square
:target: https://travis-ci.com/althonos/pyhmmer/branches
.. |Coverage| image:: https://img.shields.io/codecov/c/gh/althonos/pyhmmer?style=flat-square&maxAge=600
:target: https://codecov.io/gh/althonos/pyhmmer/
.. |PyPI| image:: https://img.shields.io/pypi/v/pyhmmer.svg?style=flat-square&maxAge=3600
:target: https://pypi.python.org/pypi/pyhmmer
.. |Wheel| image:: https://img.shields.io/pypi/wheel/pyhmmer?style=flat-square&maxAge=3600
:target: https://pypi.org/project/pyhmmer/#files
.. |Versions| image:: https://img.shields.io/pypi/pyversions/pyhmmer.svg?style=flat-square&maxAge=3600
:target: https://pypi.org/project/pyhmmer/#files
.. |Implementations| image:: https://img.shields.io/pypi/implementation/pyhmmer.svg?style=flat-square&maxAge=3600&label=impl
:target: https://pypi.org/project/pyhmmer/#files
.. |License| image:: https://img.shields.io/badge/license-MIT-blue.svg?style=flat-square&maxAge=3600
:target: https://choosealicense.com/licenses/mit/
.. |Source| image:: https://img.shields.io/badge/source-GitHub-303030.svg?maxAge=2678400&style=flat-square
:target: https://github.com/althonos/pyhmmer/
.. |Mirror| image:: https://img.shields.io/badge/mirror-EMBL-009f4d?style=flat-square&maxAge=2678400
:target: https://git.embl.de/larralde/pyhmmer/
.. |Issues| image:: https://img.shields.io/github/issues/althonos/pyhmmer.svg?style=flat-square&maxAge=600
:target: https://github.com/althonos/pyhmmer/issues
.. |Docs| image:: https://img.shields.io/readthedocs/pyhmmer?style=flat-square&maxAge=3600
:target: http://pyhmmer.readthedocs.io/en/stable/?badge=stable
.. |Changelog| image:: https://img.shields.io/badge/keep%20a-changelog-8A0707.svg?maxAge=2678400&style=flat-square
:target: https://github.com/althonos/pyhmmer/blob/master/CHANGELOG.md
.. |Downloads| image:: https://img.shields.io/badge/dynamic/json?style=flat-square&color=303f9f&maxAge=86400&label=downloads&query=%24.total_downloads&url=https%3A%2F%2Fapi.pepy.tech%2Fapi%2Fprojects%2Fpyhmmer
:target: https://pepy.tech/project/pyhmmer
.. |DOI| image:: https://img.shields.io/badge/doi-10.5281%2Fzenodo.4270012-purple?style=flat-square&maxAge=86400
:target: https://doi.org/10.5281/zenodo.4270012
Setup
-----
Run ``pip install pyhmmer`` in a shell to download the latest release and all
its dependencies from PyPi, or have a look at the
:doc:`Installation page ` to find other ways to install ``pyhmmer``.
Library
-------
.. toctree::
:maxdepth: 2
Installation
Examples
API Reference
Contributing
Changelog
Indices and tables
------------------
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`