Easel
=====

.. currentmodule:: pyhmmer.easel


.. automodule:: pyhmmer.easel


Alphabet
--------

.. autoclass:: pyhmmer.easel.Alphabet
   :members:


Bitfield
--------

.. autoclass:: pyhmmer.easel.Bitfield
   :special-members: __init__
   :members:


KeyHash
-------

.. autoclass:: pyhmmer.easel.KeyHash
   :special-members: __init__
   :members:


Multiple Sequence Alignment
---------------------------

.. autoclass:: pyhmmer.easel.MSA
   :members:

.. autoclass:: pyhmmer.easel.TextMSA(MSA)
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.easel.DigitalMSA(MSA)
   :special-members: __init__
   :members:


Sequence
--------

.. autoclass:: pyhmmer.easel.Sequence
   :members:

.. autoclass:: pyhmmer.easel.TextSequence(Sequence)
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.easel.DigitalSequence(Sequence)
   :special-members: __init__
   :members:


Sequence File
-------------

.. autoclass:: pyhmmer.easel.SequenceFile
   :special-members: __init__
   :members:


Sequence / Subsequence Index
----------------------------

.. autoclass:: pyhmmer.easel.SSIReader
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.easel.SSIWriter
   :special-members: __init__
   :members: