Plan7
=====

.. currentmodule:: pyhmmer.plan7


.. automodule:: pyhmmer.plan7


Alignment
---------

.. autoclass:: pyhmmer.plan7.Alignment
   :special-members: __init__
   :members:


Background Model
----------------

.. autoclass:: pyhmmer.plan7.Background
   :special-members: __init__
   :members:


Builder
-------

.. autoclass:: pyhmmer.plan7.Builder
   :special-members: __init__
   :members:


Domains
-------

.. autoclass:: pyhmmer.plan7.Domain
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.plan7.Domains
   :special-members: __init__
   :members:


Hits
----

.. autoclass:: pyhmmer.plan7.Hit
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.plan7.TopHits
   :special-members: __init__
   :members:


HMM
---

.. autoclass:: pyhmmer.plan7.HMM
   :special-members: __init__
   :members:


HMM File
--------

.. autoclass:: pyhmmer.plan7.HMMFile
   :special-members: __init__
   :members:


Pipeline
--------

.. autoclass:: pyhmmer.plan7.Pipeline
   :special-members: __init__
   :members:


Profile
-------

.. autoclass:: pyhmmer.plan7.Profile
   :special-members: __init__
   :members:

.. autoclass:: pyhmmer.plan7.OptimizedProfile
   :special-members: __init__
   :members: