pyhmmer
0.4.11
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Examples
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Build an HMM from an multiple sequence alignment
Loading the alignment
Building an HMM
Saving the resulting HMM
Applying the HMM to a sequence database
Analyse the active site of an enzymatic domain
Loading the HMM
Loading digitized sequences
Running a search pipeline
Rendering the alignments
Checking individual positions for catalytic activity
Fetch Marker Genes from a genome
Getting the cutoffs
Downloading the HMMs
Loading the sequences
Running the search pipeline
Filtering results