HMMER
=====

.. currentmodule:: pyhmmer.hmmer


.. automodule:: pyhmmer.hmmer


hmmsearch
---------

.. autofunction:: pyhmmer.hmmer.hmmsearch(queries, sequences, cpus=0, callback=None, **options)


phmmer
------

.. autofunction:: pyhmmer.hmmer.phmmer(queries, sequences, cpus=0, callback=None, builder=None, **options)


nhmmer
------

.. autofunction:: pyhmmer.hmmer.nhmmer(queries, sequences, cpus=0, callback=None, builder=None, **options)


hmmpress
--------

.. autofunction:: pyhmmer.hmmer.hmmpress(hmms, output)